Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
September 23, 2014
  MiCA: Virtual Digest (ISPaR)
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Two additional databases have been added to MiCA; (a) full length of high quality 16S sequences from the colon of humans, pigs, and the rumen, and (b) representative sequences of the major lineages of bacteria in the colon of mammals.
     
Forward Primer:
 
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Reverse Primer:
 
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Restriction Enzyme:
 
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Restriction Enzyme:
 
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Restriction Enzyme:
 
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Select Database:
 
Sensitivity:
  digest allows at most     mismatches within     bases from 5' end of primer
   
Report:
  Only the shortest ones All fragment lengths
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  Forward fragments Reverse fragments Organism names
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.

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Last updated on September 23 2005 13:05:38.