Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
April 16, 2014
  MiCA: T-RFLP Analysis (PAT+)
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Two additional databases have been added to MiCA; (a) full length of high quality 16S sequences from the colon of humans, pigs, and the rumen, and (b) representative sequences of the major lineages of bacteria in the colon of mammals.
     
Forward Primer:
 
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    (CSV or TXT file ONLY!)
Reverse Primer:
 
or enter here:
 
Restriction Enzyme:
 
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Select Database:
 
Sensitivity:
  digest allows at most     mismatches within     bases from 5' end of primer
   
Window (Bin) Size:
  forward match: ±     bps.
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  Forward fragments Abundance Name
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.

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Last updated on April 08 2011 00:23:26.