Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
August 28, 2014
  MiCA: Primer Sequence Prevalence Analysis
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The binary encoding scheme enables the search to be performed with a series of binary operations, which effectively reduces the search complexity, and increases performance. This compact representation also permits an accurate search, which is not possible with the character-based approaches.
     
Forward Primer:
 
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Forward Primer:
 
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Reverse Primer:
 
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Reverse Primer:
 
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Sensitivity:
  digest allows at most     mismatches within     bases from 5' end of primer
   
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.

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Last updated on December 28 2009 17:36:21.