Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
June 24, 2018
  MiCA: Primer Sequence Prevalence Analysis
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ISPaR performs in silico amplification and restriction of 16S and 18S rRNA sequences. It utilizes a binary-encoding scheme for DNA sequences and then search for sequences within genes that anneal to the specified primers.
     
Forward Primer:
  
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Forward Primer:
  
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Reverse Primer:
  
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Reverse Primer:
  
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Sensitivity:
   digest allows at most     mismatches within     bases from 5' end of primer
   
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.
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Last updated on March 05 2018 13:06:49.