Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
April 17, 2014
  MiCA: T-RFLP Analysis (APLAUS+)
Do you know ...
MiCA contains a database of 95,140 16S rRNA gene sequences from the Geeengenes database project. This project was created by T. Z. DeSantis, I. Dubosarskiy, S. R. Murray, and G. L. Andersen.
     
Forward Primer:
 
or enter here:
 
    (CSV or TXT file ONLY!)
Reverse Primer:
 
or enter here:
 
    (CSV or TXT file ONLY!)
Restriction Enzyme:
 
or enter here:
 
Select Database:
 
Sensitivity:
  digest allows at most     mismatches within     bases from 5' end of primer
   
Window (Bin) Size:
  forward match: ±     bps; reverse match: ±     bps.
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  Forward fragments Reverse fragments Abundance Name
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.

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Last updated on April 08 2011 00:23:04.