Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
October 25, 2014
  MiCA: T-RFLP Analysis (APLAUS+)
Do you know ...
MiCA has an online help system that provides detailed information and instructions on the use of the computational tools available through MiCA as well as brief tutorials to guide the selection of primers and enzymes.
     
Forward Primer:
 
or enter here:
 
    (CSV or TXT file ONLY!)
Reverse Primer:
 
or enter here:
 
    (CSV or TXT file ONLY!)
Restriction Enzyme:
 
or enter here:
 
Select Database:
 
Sensitivity:
  digest allows at most     mismatches within     bases from 5' end of primer
   
Window (Bin) Size:
  forward match: ±     bps; reverse match: ±     bps.
Sort By:
  Forward fragments Reverse fragments Abundance Name
Sort Order:
  Ascending Descending


   
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.

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Last updated on April 08 2011 00:23:04.