Virtual Diegest (ISPaR) · T-RFLP Analysis (APLAUS+) · T-RFLP Analysis (PAT+) · P.S.P.A. · E.R.P.A.
January 27, 2015
  MiCA: T-RFLP Analysis (APLAUS+)
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Two additional databases have been added to MiCA; (a) full length of high quality 16S sequences from the colon of humans, pigs, and the rumen, and (b) representative sequences of the major lineages of bacteria in the colon of mammals.
     
Forward Primer:
 
or enter here:
 
    (CSV or TXT file ONLY!)
Reverse Primer:
 
or enter here:
 
    (CSV or TXT file ONLY!)
Restriction Enzyme:
 
or enter here:
 
Select Database:
  Upload your own
Sensitivity:
  digest allows at most     mismatches within     bases from 5' end of primer
   
Window (Bin) Size:
  forward match: ±     bps; reverse match: ±     bps.
Sort By:
  Forward fragments Reverse fragments Abundance Name
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If you use the data generated by MiCA in a publication, please cite:
Shyu, C., Soule, T., Bent, S.J., Foster, J.A., Forney, L.J. (2007) MiCA: A Web-Based Tool for the Analysis of Microbial Communities Based on Terminal-Restriction Fragment Length Polymorphisms of 16S and 18S rRNA Genes. Journal of Microbial Ecology 53:562-570.
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Last updated on January 22 2015 14:55:03.